List of Available Protein Cross Linking ToolsCompOmics Group Link

PMID	Tool's Name	Tool Type	Interface	Published Year	Scoring Function	MSCleavable	Labeling Strategy	Decoy	Dev. Language	Availability	Link
11701329	GPMAW	Analysis, Visualization	Web Interface	November 2001	-		-	-	-	Licensed	http://www.gpmaw.com/html/gpmaw.html
16026606	CLPM	Visual+Analysis		July 2005	based on MASCOT		labeled	decoy	C++	Free	Cannot be Accessible
16403016	NA	type		December 2005	-		-	-	-	Free	not accessible
16579592	ProCrosslink	-		March 2006	-		180	-	-	-	No Link
18947195	Popitam	Not specific for XL		October 2008	Based on Graph Matching		-	-	-	-	Page Removed
19235167/18072732	MassMatrix	-		March 2009/2007	Probabilistic Scoring		-	Reverse	-	Licensed	http://www.massmatrix.net/
20886857	Blinks	Command Line		October 2010	-			Reverse	-	Free	http://brucelab.gs.washington.edu/software.html
21175198	XlinkIdentifier	Analysis		March 2011	Dot Product		no	Reverse	C++	Free	http://www.du-lab.org/software.html
22038510	StavroX	XL Identifier	GUI	January 2012	Non Probabilistic		-	Reverse + Shuffle	Java	Free	Manual_pdf
22723907	FindX	Identification		June 2012	ScoringFun		Labeled	-	-	Upon Request	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0038927